CLEC4M

Also known as CD209L, CD299, DC-SIGN2, DC-SIGNR, DCSIGNR, HP10347, L-SIGN, LSIGN

C-type lectin domain family 4 member M is a protein that in humans is encoded by the CLEC4M gene. CLEC4M has also been designated as CD299 (cluster of differentiation 299).

Gene data

CLEC4M

Name: C-type lectin domain family 4 member M
Type: protein-coding
Position: 7,763,153–7,769,606 (+)
Aliases: CD209L, CD209L1, CD299, DC-SIGN2, DC-SIGNR, DCSIGNR, HP10347, L-SIGN, LSIGN
Ensembl: ENSG00000104938
RefSeq RNA: NM_001144904.2, NM_001144905.2, NM_001144906.2, NM_001144907.2, NM_001144908.2
RefSeq protein: NP_001138383.1, NP_001403298.1, NP_001403299.1, NP_055072.3

This gene encodes a C-type lectin that functions in cell adhesion and pathogen recognition. This receptor recognizes a wide range of evolutionarily divergent pathogens with a large impact on public health, including tuberculosis mycobacteria, and viruses including Ebola, hepatitis C, HIV-1, influenza A, West Nile virus and the SARS-CoV acute respiratory syndrome coronavirus. The protein is organized into four distinct domains: a C-terminal carbohydrate recognition domain, a flexible tandem-repeat neck domain of variable length, a transmembrane region and an N-terminal cytoplasmic domain involved in internalization. This gene is closely related in terms of both sequence and function to a neighboring gene, CD209 (Gene ID: 30835), also known as DC-SIGN. The two genes differ in viral recognition and expression patterns, with this gene showing high expression in endothelial cells of the liver, lymph node and placenta. Polymorphisms in the tandem repeat neck domain are associated with resistance to SARS infection. [provided by RefSeq, May 2020].

Pathways

Phagosome - Homo sapiens (human)C-type lectin receptor signaling pathway - Homo sapiens (human)Tuberculosis - Homo sapiens (human)Measles - Homo sapiens (human)Disease Infectious disease Respiratory Syncytial Virus Infection Pathway Viral Infection Pathways RSV-host interactions Complement system

via MyGene.info

Gene · Ensembl

C-type lectin domain family 4 member M

Symbol: CLEC4M
Biotype: Protein coding
Organism: Homo sapiens
Location: 19:7,763,031-7,769,606
Strand: Forward (+)
Assembly: GRCh38

View on Ensembl →

via Ensembl · EMBL-EBI

Wikidata facts

Image: Protein CLEC4M PDB 1k9j.png

Show 5 more facts

HomoloGene ID: 129771
exact match: identifiers.org/ncbigene/10332
genomic end: 7834491
genomic start: 7763210
cytogenetic location: 19p13.2

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C-type lectin domain family 4 member M is a protein that in humans is encoded by the CLEC4M gene. CLEC4M has also been designated as CD299 (cluster of differentiation 299).

This gene encodes L-SIGN (liver/lymph node-specific intracellular adhesion molecules-3 grabbing non-integrin), a type II integral membrane protein that is 77% identical to CD209 antigen, an HIV gp120-binding protein. This protein, like CD209, efficiently binds both intercellular adhesion molecule 3 (ICAM3) and HIV-1 gp120, and enhances HIV-1 infection of T cells. This gene is mapped to 19p13.3, in a cluster with the CD209 and CD23/FCER2 genes. Multiple alternatively spliced transcript variants have been found for this gene, but the biological validity of some variants has not been determined.